Received a replacement clip for the timing chain master link yesterday and got everything installed.
I've heard a couple different styles of getting the fish clip on the master link. Snowbum says install at 2 o'clock on the cam sprocket, Matthew Parkhouse says he uses 10 o'clock. Personally, since I had the oil pan off anyway, I moved the chain where the masterlink is at about 7 o'clock, pretty much centered in front of one of the holes that go into the engine. Then I took needlenose pliers, lifted the clip into the hole area because it gives you way more room to work, hooked the center of the clip around the forward-most pin, then and let the clip hang (closed end of the pin must be at the front of the rotation with the open end trailing). Doing this in front of the hole makes gives you more room to work with the clip around the pins than trying to use tweezers or surgical tools and fitting between the crank case, obviously if the oil pan is still on the bike these holes should be plugged up and you won't be able to do it this way. Then I rotated the engine so the chain was at about 10 o'clock on the cam sprocket. Doing so allowed gravity to do the work of centering the fish clip right above the second pin. At this point all it took was a slight adjustment of position using a thin screwdriver, and then using that same screwdriver to press downward and get the clip over the pins. I've heard some people using magnetic screwdrivers to do the job, but I found that the magnetic tip was trying to pull the rearmost spacer off, so I switch to a non-magnetic, normal, thin screwdriver.
Today I got everything wrapped up and started the bike. It definitely idles/runs much quieter. Still need to dial in the timing, but since it's raining for the next week here, I'm in no rush.